BSD Ports

biology/mapm3 3.0_1 FreeBSD

Constructs linkage maps of markers segregating in experimental crosses

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
MAPMAKER
Categories
biology
Package size
295.0 KiB, 838.9 KiB installed

Description

MAPMAKER/EXP is a linkage analysis package designed to help construct primary linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP performs full multipoint linkage analysis (simultaneous estimation of all recombination fractions from the primary data) for dominant, recessive, and co- dominant (e.g. RFLP-like) markers. MAPMAKER/EXP is an experimental-cross-only successor to the original MAPMAKER program.

MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map genes controlling polygenic quantitative traits in F2 intercrosses and BC1 backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL can be found in the technical report (included with MAPMAKER/QTL).

In the other systems

SystemPortVersion
FreeBSDbiology/mapm33.0_1
DragonFlybiology/mapm33.0_1

Install

Binary package:

pkg install mapm3

From the ports tree:

cd /usr/ports/biology/mapm3/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	mapm3>0:biology/mapm3

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest3.0_13.0_1-3.0_13.0_1
FreeBSD:14:quarterly3.0_13.0_1n/a3.0_13.0_1
FreeBSD:15:latest3.0_13.0_1n/a3.0_13.0_1
FreeBSD:15:quarterly3.0_13.0_1n/an/an/a
FreeBSD:16:latest3.0_13.0_1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

No port depends on this one.

Configuration

No options to configure.

USES
ncurses tar:Z
Service scripts
none

Files

pkg-plist 6
  • bin/mapmaker
  • bin/mapmaker.help
  • bin/qtl
  • bin/qtl.help
  • bin/xmapmaker
  • bin/xqtl
distinfo 1
FileSizeSHA256
mapm3-source.tar.Z1.321227e+06107c8d0e7e89e2fe43fe17233d38c22161def851c8094435f3440a39c0cdca4c
Master sites 4
  • http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  • ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/
  • http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/
  • http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/

Commit history 0

No commits in the history this site was built from.