BSD Portsbiology/metaeuk 7 FreeBSD
Gene discovery and annotation for large-scale eukaryotic metagenomics
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
0b23c55e5d- License
- GPLv3
- Categories
- biology
- Package size
- 3498.8 KiB, 11131.6 KiB installed
Description
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand. MetaEuk is GPLv3-licensed open source software that is implemented in C++ and available for Linux and macOS. The software is designed to run efficiently on multiple cores.
In the other systems
The newest version among them is 7, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/metaeuk | 7 newest | none known | - | [email protected] | 2026-10-05 |
| HardenedBSD | biology/metaeuk | 7 newest | no data | - | [email protected] | - |
| GhostBSD | biology/metaeuk | 7 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install metaeukFrom the ports tree:
cd /usr/ports/biology/metaeuk/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= metaeuk>0:biology/metaeukPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 7 | 7 | - | - | - |
| FreeBSD:14:quarterly | 7 | 7 | n/a | - | - |
| FreeBSD:15:latest | 7 | 7 | n/a | - | - |
| FreeBSD:15:quarterly | 7 | 7 | n/a | n/a | n/a |
| FreeBSD:16:latest | 7 | 7 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right (to build, as it needs nothing to run); at most 8 of each. "Dependencies" below lists them all.
Dependencies
As this port's Makefile names them.
Build 1
xxd: editors/vim
Test 1
bash: shells/bash
The full lists below include those, and their dependencies in turn.
Build dependencies 17
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake perl5 shebangfix
- Service scripts
- none
Files
distinfo 3
| File | Size | SHA256 |
|---|---|---|
| soedinglab-metaeuk-7-bba0d80_GH0.tar.gz | 1.3342465e+07 | 45eff3cb8e15626b1142d4717bf43a6e7a1308bc8a6eb1718c70d33d613898fa |
| soedinglab-metaeuk-regression-f7c3999_GH0.tar.gz | 6.720389e+06 | 4724516451e7d9d977c4d2edc04ab86188d5e0326f00fbc6e208df241ac0b1b3 |
| soedinglab-MMseqs2-Regression-5e3bc17_GH0.tar.gz | 2.7715323e+07 | 415a7e81821c5add73c8c3b450acbd316d7244d151a306864ff3c260b115b7be |