BSD Portsbiology/migrate 5.0.6_2 FreeBSD
Program to estimate population sizes and migration rates
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- biology
- Package size
- 618.8 KiB, 3830.6 KiB installed
Description
Migrate estimates effective population sizes and past migration rates between two or "n" populations assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. The n-population migrate can use sequence data, microsatellite data or electrophoretic data.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/migrate | 5.0.6_2 |
| DragonFly | biology/migrate | 5.0.6_2 |
Install
Binary package:
pkg install migrateFrom the ports tree:
cd /usr/ports/biology/migrate/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= migrate>0:biology/migratePackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 5.0.6_2 | 5.0.6_2 | - | 5.0.6_2 | 5.0.6_2 |
| FreeBSD:14:quarterly | 5.0.6_2 | 5.0.6_2 | n/a | 5.0.6_2 | 5.0.6_2 |
| FreeBSD:15:latest | 5.0.6_2 | 5.0.6_2 | n/a | 5.0.6_2 | 5.0.6_2 |
| FreeBSD:15:quarterly | 5.0.6_2 | 5.0.6_2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 5.0.6_2 | 5.0.6_2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
No port depends on this one.
Configuration
Options name: biology_migrate
| Option | Default | Description |
|---|---|---|
| DOCS | off | Build and/or install documentation |
| EXAMPLES | off | Build and/or install examples |
| THREAD | off | Build with THREAD support |
- Service scripts
- none
- Conflicts with
- py*-sqlalchemy-migrate
Files
Manual pages 2
- migrate(1)
- migrate-n(1)
pkg-plist 8
- bin/migrate
- bin/migrate-n
- share/man/man1/migrate-n.1.gz
- share/man/man1/migrate.1.gz
- share/doc/migrate/graphics/librarian.gif
- share/doc/migrate/graphics/mail.gif
- share/doc/migrate/graphics/migrate.gif
- share/doc/migrate/graphics/packet.gif
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| migrate-5.0.6.src.tar.gz | 1.9317248e+07 | b7092847d2fa54f5327b5d8e0b4079c343f1731c8a6a29fa464842b302c47708 |
Master sites 1
- https://peterbeerli.com/migrate-html5/download_version4/
Commit history 0
No commits in the history this site was built from.