biology/p5-AcePerl 1.92_5 FreeBSD

Perl5 interface to the ACEDB genome database system

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: ART10, GPLv1+
Categories: biology, databases, perl5
Package size: 262.8 KiB, 680.6 KiB installed

Description

AcePerl is an object-oriented Perl interface for the ACEDB genome database system. It provides functionality for connecting to remote ACEDB databases, performing queries, fetching ACE objects, and updating databases.

In the other systems

The newest version among them is 1.92, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/p5-AcePerl

1.92_5 newest

none known

[email protected]

NetBSD

wip/p5-Aceperl by name

1.92 newest

none known

[email protected]

DragonFly

biology/p5-AcePerl

1.92_5 newest

none known

[email protected]

GhostBSD

biology/p5-AcePerl

1.92_5 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install p5-AcePerl

From the ports tree:

cd /usr/ports/biology/p5-AcePerl/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-AcePerl>0:biology/p5-AcePerl

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.92_5

FreeBSD:14:quarterly

1.92_5

n/a

1.92_5

FreeBSD:15:latest

1.92_5

n/a

1.92_5

FreeBSD:15:quarterly

1.92_5

n/a

FreeBSD:16:latest

1.92_5

n/a

FreeBSD:16:quarterly

n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-AcePerl"]
  me --> d0["devel/p5-Cache"]
  me --> d1["devel/p5-Cache-Cache"]
  me --> d2["devel/p5-File-NFSLock"]
  me --> d3["devel/p5-Heap"]
  me --> d4["devel/p5-IO-String"]
  me --> d5["devel/p5-IPC-ShareLite"]
  me --> d6["devel/p5-TimeDate"]
  me --> d7["lang/p5-Error"]
  me -.-> dmore(["2 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 1

p5-Cache-Cache>=0 : devel/p5-Cache-Cache

Runtime 1

p5-Cache-Cache>=0 : devel/p5-Cache-Cache

The full lists below include those, and their dependencies in turn.

Build dependencies 10

Run dependencies 10

No port depends on this one.

Configuration

No options to configure.

USES: perl5
Service scripts: none

Files

pkg-plist 145

bin/ace.pl
%%SITE_ARCH%%/Ace.pm
%%SITE_ARCH%%/Ace/Browser/AceSubs.pm
%%SITE_ARCH%%/Ace/Browser/GeneSubs.pm
%%SITE_ARCH%%/Ace/Browser/SearchSubs.pm
%%SITE_ARCH%%/Ace/Browser/SiteDefs.pm
%%SITE_ARCH%%/Ace/Browser/TreeSubs.pm
%%SITE_ARCH%%/Ace/Freesubs.pm
%%SITE_ARCH%%/Ace/Graphics/Fk.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/anchored_arrow.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/arrow.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/box.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/crossbox.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/dot.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/ex.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/graded_segments.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/group.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/line.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/primers.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/segments.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/span.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/toomany.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/transcript.pm
%%SITE_ARCH%%/Ace/Graphics/Glyph/triangle.pm
%%SITE_ARCH%%/Ace/Graphics/GlyphFactory.pm
%%SITE_ARCH%%/Ace/Graphics/Panel.pm
%%SITE_ARCH%%/Ace/Graphics/Track.pm
%%SITE_ARCH%%/Ace/Iterator.pm
%%SITE_ARCH%%/Ace/Local.pm
%%SITE_ARCH%%/Ace/Model.pm
%%SITE_ARCH%%/Ace/Object.pm
%%SITE_ARCH%%/Ace/Object/Wormbase.pm
%%SITE_ARCH%%/Ace/RPC.pm
%%SITE_ARCH%%/Ace/Sequence.pm
%%SITE_ARCH%%/Ace/Sequence/Feature.pm
%%SITE_ARCH%%/Ace/Sequence/FeatureList.pm
%%SITE_ARCH%%/Ace/Sequence/GappedAlignment.pm
%%SITE_ARCH%%/Ace/Sequence/Gene.pm
%%SITE_ARCH%%/Ace/Sequence/Homol.pm
%%SITE_ARCH%%/Ace/Sequence/Multi.pm
%%SITE_ARCH%%/Ace/Sequence/Transcript.pm
%%SITE_ARCH%%/Ace/SocketServer.pm
%%SITE_ARCH%%/GFF/Filehandle.pm
%%SITE_ARCH%%/auto/Ace/Freesubs/Freesubs.so
%%SITE_ARCH%%/auto/Ace/Object/_asAce.al
%%SITE_ARCH%%/auto/Ace/Object/_asHTML.al
%%SITE_ARCH%%/auto/Ace/Object/_asTable.al
%%SITE_ARCH%%/auto/Ace/Object/_asXML.al
%%SITE_ARCH%%/auto/Ace/Object/_default_makeHTML.al
%%SITE_ARCH%%/auto/Ace/Object/_insert.al
%%SITE_ARCH%%/auto/Ace/Object/_special_dump.al
%%SITE_ARCH%%/auto/Ace/Object/_to_ace_date.al
%%SITE_ARCH%%/auto/Ace/Object/_xmlNumber.al
%%SITE_ARCH%%/auto/Ace/Object/add_row.al
%%SITE_ARCH%%/auto/Ace/Object/add_tree.al
%%SITE_ARCH%%/auto/Ace/Object/asAce.al
%%SITE_ARCH%%/auto/Ace/Object/asDNA.al
%%SITE_ARCH%%/auto/Ace/Object/asGif.al
%%SITE_ARCH%%/auto/Ace/Object/asHTML.al
%%SITE_ARCH%%/auto/Ace/Object/asPeptide.al
%%SITE_ARCH%%/auto/Ace/Object/asString.al
%%SITE_ARCH%%/auto/Ace/Object/asTable.al
%%SITE_ARCH%%/auto/Ace/Object/asXML.al
%%SITE_ARCH%%/auto/Ace/Object/autosplit.ix
%%SITE_ARCH%%/auto/Ace/Object/comment.al
%%SITE_ARCH%%/auto/Ace/Object/commit.al
%%SITE_ARCH%%/auto/Ace/Object/date_style.al
%%SITE_ARCH%%/auto/Ace/Object/debug.al
%%SITE_ARCH%%/auto/Ace/Object/delete.al
%%SITE_ARCH%%/auto/Ace/Object/escapeXML.al
%%SITE_ARCH%%/auto/Ace/Object/isComment.al
%%SITE_ARCH%%/auto/Ace/Object/kill.al
%%SITE_ARCH%%/auto/Ace/Object/replace.al
%%SITE_ARCH%%/auto/Ace/Object/rollback.al
%%SITE_ARCH%%/auto/Ace/Object/tags.al
%%SITE_ARCH%%/auto/Ace/Object/timestamp.al
%%SITE_ARCH%%/auto/Ace/RPC/RPC.so
%%SITE_ARCH%%/auto/Ace/Sequence/Feature/autosplit.ix
%%SITE_ARCH%%/auto/Ace/Sequence/autosplit.ix
%%SITE_ARCH%%/auto/Ace/_register_iterator.al
%%SITE_ARCH%%/auto/Ace/_restore_iterator.al
%%SITE_ARCH%%/auto/Ace/_save_iterator.al
%%SITE_ARCH%%/auto/Ace/_unregister_iterator.al
%%SITE_ARCH%%/auto/Ace/auto_save.al
%%SITE_ARCH%%/auto/Ace/autosplit.ix
%%SITE_ARCH%%/auto/Ace/class_count.al
%%SITE_ARCH%%/auto/Ace/classes.al
%%SITE_ARCH%%/auto/Ace/date.al
%%SITE_ARCH%%/auto/Ace/date_style.al
%%SITE_ARCH%%/auto/Ace/datetime.al
%%SITE_ARCH%%/auto/Ace/debug.al
%%SITE_ARCH%%/auto/Ace/fetch_many.al
%%SITE_ARCH%%/auto/Ace/find.al
%%SITE_ARCH%%/auto/Ace/freeprotect.al
%%SITE_ARCH%%/auto/Ace/grep.al
%%SITE_ARCH%%/auto/Ace/layout.al
%%SITE_ARCH%%/auto/Ace/new.al
%%SITE_ARCH%%/auto/Ace/parse.al
%%SITE_ARCH%%/auto/Ace/parse_file.al

The first 100 are listed.

distinfo 1

File

Size

SHA256

AcePerl-1.92.tar.gz

300163

2c97ca2be3b859e4a3bc35d706da9829a30aead0206e43f00d0136d995ae783c

Master sites 1

CPAN/Ace

Commit history 0

No commits in the history this site was built from.