biology/p5-Bio-GFF3 2.0_2 FreeBSD

Fast low-level functions for parsing and formatting GFF3

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: ART10, GPLv1+
Categories: biology, perl5
Package size: 25.0 KiB, 51.4 KiB installed

Description

Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. All they do is convert back and forth between low-level Perl data structures and GFF3 text.

In the other systems

The newest version among them is 2.0, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/p5-Bio-GFF3

2.0_2 newest

none known

[email protected]

DragonFly

biology/p5-Bio-GFF3

2.0_2 newest

none known

[email protected]

HardenedBSD

biology/p5-Bio-GFF3

2.0_2 newest

no data

[email protected]

GhostBSD

biology/p5-Bio-GFF3

2.0_2 newest

no data

[email protected]

Install

Binary package:

pkg install p5-Bio-GFF3

From the ports tree:

cd /usr/ports/biology/p5-Bio-GFF3/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-GFF3>0:biology/p5-Bio-GFF3

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

2.0_2

FreeBSD:14:quarterly

2.0_2

n/a

2.0_2

FreeBSD:15:latest

2.0_2

n/a

2.0_2

FreeBSD:15:quarterly

2.0_2

n/a

FreeBSD:16:latest

2.0_2

n/a

FreeBSD:16:quarterly

n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/p5-Bio-GFF3"]
  me --> d0["converters/p5-MIME-Base32"]
  me --> d1["converters/p5-MIME-Base64"]
  me --> d2["devel/p5-Exporter-Tiny"]
  me --> d3["devel/p5-File-ReadBackwards"]
  me --> d4["lang/p5-List-MoreUtils"]
  me --> d5["lang/p5-List-MoreUtils-XS"]
  me --> d6["lang/perl5.42"]
  me --> d7["net/p5-URI"]
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 3

p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
p5-URI>=0 : net/p5-URI

Runtime 3

p5-File-ReadBackwards>=0 : devel/p5-File-ReadBackwards
p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
p5-URI>=0 : net/p5-URI

Test 1

p5-IO-String>=0 : devel/p5-IO-String

The full lists below include those, and their dependencies in turn.

Build dependencies 8

Run dependencies 8

No port depends on this one.

Configuration

No options to configure.

USES: perl5
Service scripts: none

Files

pkg-plist 12

bin/gff3_from_fasta
%%SITE_PERL%%/Bio/GFF3/LowLevel.pm
%%SITE_PERL%%/Bio/GFF3/LowLevel/Parser.pm
%%SITE_PERL%%/Bio/GFF3/LowLevel/Parser/1_0_backcompat.pm
%%SITE_PERL%%/Bio/GFF3/Transform/FromFasta.pm
%%SITE_PERL%%/Bio/GFF3/Transform/SyncDirectives.pm
%%PERL5_MAN3%%/Bio::GFF3::LowLevel.3.gz
%%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser.3.gz
%%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser::1_0_backcompat.3.gz
%%PERL5_MAN3%%/Bio::GFF3::Transform::FromFasta.3.gz
%%PERL5_MAN3%%/Bio::GFF3::Transform::SyncDirectives.3.gz
%%PERL5_MAN1%%/gff3_from_fasta.1.gz

distinfo 1

File

Size

SHA256

Bio-GFF3-2.0.tar.gz

74951

cbfef8376d3d9026483360150e3745a27dad78e995348d0c08ef5b2e4374170c

Master sites 1

CPAN

Commit history 0

No commits in the history this site was built from.