BSD Ports

biology/p5-Bio-Glite 0.10_2 FreeBSD

Perl Interface to G-language

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Categories
biology, perl5
Package size
15.7 KiB, 35.3 KiB installed

Description

Bio::Glite is an interface to G-language Genome Analysis Environment through its REST web service (http://www.g-language.org). This module allows almost everything G-language GAE can do, without installing all necessary tookits and modules.

Advantage of this module over the standard installation of G-language GAE package is:

  1. Easy installation from CPAN
  2. Extremely light-weight (less than 1000 lines of code)
  3. Does not require much CPU/RAM (all calculation is done on the cloud)

Disadvantages includes:

  1. Slower analysis speed
  2. Internet connection is required
  3. No other software interfaces such as the G-language Shell

In the other systems

The newest version among them is 0.10, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
FreeBSDbiology/p5-Bio-Glite0.10_2 newestnone known-[email protected]-
DragonFlybiology/p5-Bio-Glite0.10_2 newestnone known-[email protected]-
HardenedBSDbiology/p5-Bio-Glite0.10_2 newestno data-[email protected]-
GhostBSDbiology/p5-Bio-Glite0.10_2 newestno data-[email protected]-

Install

Binary package:

pkg install p5-Bio-Glite

From the ports tree:

cd /usr/ports/biology/p5-Bio-Glite/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	p5-Bio-Glite>0:biology/p5-Bio-Glite

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest0.10_20.10_20.10_20.10_20.10_2
FreeBSD:14:quarterly0.10_20.10_2n/a0.10_20.10_2
FreeBSD:15:latest0.10_20.10_2n/a0.10_20.10_2
FreeBSD:15:quarterly0.10_20.10_2n/an/an/a
FreeBSD:16:latest0.10_20.10_2n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

As this port's Makefile names them.

Build 1

Runtime 1

The full lists below include those, and their dependencies in turn.

Build dependencies 25
Run dependencies 25

No port depends on this one.

Configuration

No options to configure.

USES
perl5
Service scripts
none

Files

pkg-plist 2
  • %%SITE_PERL%%/Bio/Glite.pm
  • %%PERL5_MAN3%%/Bio::Glite.3.gz
distinfo 1
FileSizeSHA256
Bio-Glite-0.10.tar.gz25801f747af67efe6feb6daca599034624510f75c6f73f1509f3eef3836f2030dfc71
Master sites 1
  • CPAN

Commit history 0

No commits in the history this site was built from.