biology/pear-merger 0.9.6_1 FreeBSD

Memory-efficient and highly accurate paired-end read merger

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
Last update: 2026-09-06
Commit: 0feb3f7753
License: CC-BY-NC-SA-3.0
Categories: biology
Package size: 57.5 KiB, 695.7 KiB installed

Description

PEAR is an ultrafast, memory-efficient and highly accurate paired-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory.

In the other systems

The newest version among them is 0.9.6, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/pear-merger

0.9.6_1 newest

none known

[email protected]

2026-09-06

DragonFly

biology/pear-merger

0.9.6_1 newest

none known

[email protected]

HardenedBSD

biology/pear-merger

0.9.6_1 newest

no data

[email protected]

GhostBSD

biology/pear-merger

0.9.6_1 newest

no data

[email protected]

Compare across BSDs

Install

Binary package:

pkg install pear-merger

From the ports tree:

cd /usr/ports/biology/pear-merger/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	pear-merger>0:biology/pear-merger

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

0.9.6_1

FreeBSD:14:quarterly

0.9.6_1

n/a

0.9.6_1

FreeBSD:15:latest

0.9.6_1

n/a

0.9.6_1

FreeBSD:15:quarterly

0.9.6_1

n/a

FreeBSD:16:latest

0.9.6_1

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

No port depends on this one.

Configuration

No options to configure.

Service scripts: none

Message after installing

===>   NOTICE:

The pear-merger port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1

File

Size

SHA256

pear_0.9.6_src_all.tar.gz

292790

f7728371e26a5b46fa928b0f7ae1b552ed6a78815b117ba48ef1af98e96c8e2b

Master sites 1

https://depot.galaxyproject.org/software/pear/

Commit history 1

Date Commit Credits Log message

2026-09-06

0feb3f7753

Jason W. Bacon

biology/pear-merger: Release to ports@

Note to anyone interested in maintaining this port: Newer versions are available, but cannot be downloaded from official sources without completing an interactive form. A license is required, with different terms for commercial and academic use. See https://www.h-its.org/software/pear-paired-end-read-merger/