BSD Portsbiology/primer3 2.3.6 FreeBSD
Primer3 helps to choose primers for PCR reactions
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv2
- Categories
- biology
- Package size
- 99.4 KiB, 223.7 KiB installed
Description
"Primer3 is a complete rewrite of the original PRIMER program (Primer 0.5), written by Steve Lincoln, Mark Daly, and Eric Lander. See DIFFERENCES FROM EARLIER VERSIONS for a discussion of how Primer3 differs from its predecessors, Primer 0.5 and Primer v2.
Primer3 picks primers for PCR reactions, considering as criteria:
o oligonucleotide melting temperature, size, GC content, and primer-dimer possibilities, o PCR product size, o positional constraints within the source sequence, and o miscellaneous other constraints.
All of these criteria are user-specifiable as constraints, and some are specifiable as terms in an objective function that characterizes an optimal primer pair."
- from the README file
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/primer3 | 2.3.6 |
| NetBSD | biology/primer3 | 2.3.6 |
| DragonFly | biology/primer3 | 2.3.6 |
| HardenedBSD | biology/primer3 | 2.3.6 |
| GhostBSD | biology/primer3 | 2.3.6 |
Install
Binary package:
pkg install primer3From the ports tree:
cd /usr/ports/biology/primer3/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= primer3>0:biology/primer3Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.3.6 | 2.3.6 | 2.3.6 | 2.3.6 | 2.3.6 |
| FreeBSD:14:quarterly | 2.3.6 | 2.3.6 | n/a | 2.3.6 | 2.3.6 |
| FreeBSD:15:latest | 2.3.6 | 2.3.6 | n/a | 2.3.6 | 2.3.6 |
| FreeBSD:15:quarterly | 2.3.6 | 2.3.6 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.3.6 | 2.3.6 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 3
Required by 1
Configuration
No options to configure.
- USES
- gmake
- Service scripts
- none
Message after installing
===> NOTICE: The primer3 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| primer3-src-2.3.6.tar.gz | 1.667573e+06 | 2ff54faf957f0d7e4c79d9536fa1027b028bc5e4c6005f142df42ef85562ecd4 |
Master sites 1
- SF
Commit history 0
No commits in the history this site was built from.