biology/py-gtfparse 3.0.2
Parsing tools for GTF (gene transfer format) files
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
008526e415- License
- APACHE20
- Categories
- biology, python
Description
Tools to parse files in GTF (gene transfer format).
GTF is a common format to exchange large portions of, or entire genotype information.
Install
As a binary package — by origin, or by package name:
pkg install biology/py-gtfparse
pkg install py312-gtfparseFrom the ports tree:
cd /usr/ports/biology/py-gtfparse/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-gtfparse>0:biology/py-gtfparsePackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | 3.0.2 | - | - | - |
| FreeBSD:14:quarterly | - | - | n/a | - | - |
| FreeBSD:15:latest | 3.0.2 | 3.0.2 | n/a | - | - |
| FreeBSD:15:quarterly | - | 2.8.0 | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 3.0.2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 2
${PYTHON_PKGNAMEPREFIX}pandas>=2.2.2: math/py-pandas${PYTHON_PKGNAMEPREFIX}pyarrow>=18.0.0: databases/py-pyarrow
The full lists below include those, and their dependencies in turn.
All build dependencies 16
All run dependencies 118
- archivers/brotli
- archivers/liblz4
- archivers/snappy
- archivers/zstd
- audio/flac
- audio/lame
- audio/libogg
- audio/libsndfile
- audio/libsoxr
- audio/libvorbis
- audio/mpg123
- audio/opus
- audio/pulseaudio
- audio/speexdsp
- audio/webrtc-audio-processing
- converters/libiconv
- databases/arrow
- databases/gdbm
- databases/py-pyarrow
- databases/py-sqlite3
- databases/sqlite3
- devel/abseil
- devel/aws-c-common
- devel/aws-c-compression
- devel/aws-c-event-stream
- devel/aws-c-http
- devel/aws-c-io
- devel/aws-c-mqtt
- devel/aws-c-s3
- devel/aws-c-sdkutils
- devel/aws-checksums
- devel/aws-crt-cpp
- devel/aws-sdk-cpp
- devel/benchmark
- devel/binutils
- devel/boost-libs
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/gflags
- devel/glib20
- devel/googletest
- devel/grpc
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libedit
- devel/libevdev
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libltdl
- devel/libpciaccess
- devel/libudev-devd
- devel/libunistring
- devel/llvm19
- devel/orc
- devel/pcre2
- devel/protobuf
- devel/py-packaging
- devel/py-python-dateutil
- devel/py-pytz
- devel/py-six
- devel/py-tzdata
- devel/re2
- devel/readline
- devel/thrift
- devel/thrift-cpp
- dns/c-ares
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/libdrm
- lang/duktape-lib
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/fftw3
- math/fftw3-float
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-bottleneck
- math/py-numexpr
- math/py-numpy
- math/py-pandas
- misc/hwdata
- net/avahi-app
- print/indexinfo
- security/aws-c-auth
- security/aws-c-cal
- security/libgcrypt
- security/libgpg-error
- security/libssh2
- security/s2n-tls
- sysutils/consolekit2
The first 100 are listed.
No port depends on this one.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| gtfparse-3.0.2.tar.gz | 144223 | 33adafa383b71eacd88c92d7a6218ca27790d7f4dfac61ad2aac94fee05c779a |
Master sites 1
- PYPI