BSD Ports

biology/py-py2bit 1.0.1 FreeBSD

Python interface for 2bit packed nucleotide files

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
2414383046
License
MIT
Categories
biology, python
Package size
19.9 KiB, 54.6 KiB installed

Description

py2bit is a python extension, written in C, for quick access to 2bit files for randomly accessible, packed nucleotide sequences. The extension uses lib2bit for file access.

In the other systems

SystemPortVersion
FreeBSDbiology/py-py2bit1.0.1
DragonFlybiology/py-py2bit0.3.0_1
HardenedBSDbiology/py-py2bit1.0.1
GhostBSDbiology/py-py2bit1.0.1

Install

Binary package:

pkg install py312-py2bit

From the ports tree:

cd /usr/ports/biology/py-py2bit/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	py312-py2bit>0:biology/py-py2bit

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.0.11.0.10.3.00.3.0_11.0.1
FreeBSD:14:quarterly1.0.11.0.1n/a0.3.0_11.0.1
FreeBSD:15:latest1.0.11.0.1n/a0.3.0_10.3.0_1
FreeBSD:15:quarterly1.0.11.0.1n/an/an/a
FreeBSD:16:latest1.0.11.0.1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 11
Run dependencies 7

Configuration

No options to configure.

USES
python
Service scripts
none

Message after installing

===>   NOTICE:

The py312-py2bit port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1
FileSizeSHA256
py2bit-1.0.1.tar.gz187654972f85eb3844cdfba43eb54ab3c8349a0536e03dfd7db07ca8d3447285ad20c
Master sites 1
  • PYPI

Commit history 1

DateCommitCreditsLog message
2414383046 Jason W. Bacon Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.