biology/py-scikit-bio 0.7.4
Data structures, algorithms, educational resources for bioinformatics
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
081daa2a50- License
- BSD3CLAUSE
- Categories
- biology, education, python
Description
scikit-bio is an open-source python package providing data structures, algorithms, and educational resources for bioinformatics.
Install
As a binary package — by origin, or by package name:
pkg install biology/py-scikit-bio
pkg install py312-scikit-bioFrom the ports tree:
cd /usr/ports/biology/py-scikit-bio/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-scikit-bio>0:biology/py-scikit-bioPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | 0.7.4 | - | - | 0.7.4 |
| FreeBSD:14:quarterly | - | 0.7.4 | n/a | - | 0.7.4 |
| FreeBSD:15:latest | - | 0.7.4 | n/a | - | 0.6.3 |
| FreeBSD:15:quarterly | - | 0.7.4 | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 0.7.4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 2
${PYTHON_PKGNAMEPREFIX}numpy>=2.0: math/py-numpy${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 11
${PYTHON_PKGNAMEPREFIX}array-api-compat>=1.3: devel/py-array-api-compat${PYTHON_PKGNAMEPREFIX}biom-format>=2.1.16: biology/py-biom-format${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2: devel/py-decorator${PYTHON_PKGNAMEPREFIX}h5py>=3.6.0: science/py-h5py${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3: devel/py-natsort${PYTHON_PKGNAMEPREFIX}numpy>=2.0: math/py-numpy${PYTHON_PKGNAMEPREFIX}pandas>=1.5.0: math/py-pandas${PYTHON_PKGNAMEPREFIX}patsy>=0.5.0: math/py-patsy${PYTHON_PKGNAMEPREFIX}requests>=2.20.0: www/py-requests${PYTHON_PKGNAMEPREFIX}scipy>=1.9.0: science/py-scipy${PYTHON_PKGNAMEPREFIX}statsmodels>=0.14.0: math/py-statsmodels
Test 2
${PYTHON_PKGNAMEPREFIX}matplotlib>0: math/py-matplotlib${PYTHON_PKGNAMEPREFIX}responses>0: devel/py-responses
The full lists below include those, and their dependencies in turn.
All build dependencies 24
- archivers/liblz4
- archivers/zstd
- devel/binutils
- devel/gettext-runtime
- devel/libffi
- devel/py-build
- devel/py-installer
- devel/py-packaging
- devel/py-pyproject-hooks
- devel/py-setuptools
- devel/py-wheel
- devel/readline
- lang/cython
- lang/gcc14
- lang/python312
- lang/python315
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- print/indexinfo
- textproc/expat2
All run dependencies 53
- archivers/liblz4
- archivers/zstd
- biology/py-biom-format
- databases/py-sqlite3
- databases/sqlite3
- devel/binutils
- devel/gettext-runtime
- devel/libedit
- devel/libffi
- devel/py-array-api-compat
- devel/py-click
- devel/py-decorator
- devel/py-interface-meta
- devel/py-natsort
- devel/py-packaging
- devel/py-python-dateutil
- devel/py-pytz
- devel/py-six
- devel/py-typing-extensions
- devel/py-tzdata
- devel/py-wrapt
- devel/readline
- dns/py-idna
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-bottleneck
- math/py-formulaic
- math/py-narwhals
- math/py-numexpr
- math/py-numpy
- math/py-pandas
- math/py-patsy
- math/py-statsmodels
- math/qhull
- net/py-pysocks
- net/py-urllib3
- print/indexinfo
- science/hdf5
- science/libaec
- science/py-h5py
- science/py-scipy
- security/py-certifi
- textproc/expat2
- textproc/py-charset-normalizer
- www/py-requests
No port depends on this one.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
- Conflicts with
- ${PYTHON_PKGNAMEPREFIX}ddtrace
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| scikit_bio-0.7.4.tar.gz | 6.01671e+06 | 833f6a9e631483288385d628286f3d452f48383476bf125766d3f197dd9fa4ce |
Master sites 1
- PYPI