biology/readseq 2.1.19_2

Read and reformat biosequences, Java command-line version

Repository: FreeBSD ports
Maintainer: [email protected]
Last update: 2026-10-08
Commit: 2414383046
License: PD
Categories: biology, java
Package size: 696.9 KiB, 750.1 KiB installed

Description

Sequence reading library developed by the Ribosomal Database Project. It can handle genbank, embl, fasta, fastq, sff and sto files, can read from files or streams, and can handle indexing files.

Install

As a binary package — by origin, or by package name:

pkg install biology/readseq
pkg install readseq

From the ports tree:

cd /usr/ports/biology/readseq/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	readseq>0:biology/readseq

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	2.1.19_2	2.1.19_2	2.1.19	2.1.19	2.1.19_2
FreeBSD:14:quarterly	2.1.19_2	2.1.19_2	n/a	2.1.19	2.1.19_2
FreeBSD:15:latest	2.1.19_2	2.1.19_2	n/a	2.1.19	2.1.19
FreeBSD:15:quarterly	2.1.19_2	2.1.19_2	n/a	n/a	n/a
FreeBSD:16:latest	2.1.19_2	2.1.19_2	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

2.1.19_2

2.1.19

2.1.19_2

FreeBSD:14:quarterly

2.1.19_2

n/a

2.1.19

2.1.19_2

FreeBSD:15:latest

2.1.19_2

n/a

2.1.19

FreeBSD:15:quarterly

2.1.19_2

n/a

FreeBSD:16:latest

2.1.19_2

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

All run dependencies 53

Required by 1

biology/biostar-tools

Configuration

No options to configure.

USES: java
Service scripts: none

Message after installing

===>   NOTICE:

The readseq port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1

File	Size	SHA256
readseq.jar	767702	966e7d4e1c4c6add588b3ead281c993c6a0c35b991a1ded53f81230a54ac6778

File

Size

SHA256

readseq.jar

767702

966e7d4e1c4c6add588b3ead281c993c6a0c35b991a1ded53f81230a54ac6778

Master sites 1

https://sourceforge.net/projects/readseq/files/latest/

Commit history 1

Date Commit Credits Log message

Date	Commit	Credits	Log message
2026-10-08	`2414383046`	Jason W. Bacon	Release numerous ports to ports@ I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.

2026-10-08

2414383046

Jason W. Bacon

Release numerous ports to ports@

I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.