BSD Portsbiology/seaview 5.1,1 FreeBSD
Multiple DNA/protein sequence alignment editor
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
9204ffba9a- License
- GPLv3
- Categories
- biology
- Package size
- 359.3 KiB, 850.5 KiB installed
Description
SeaView is a multiple sequence alignment editor.
You can align DNA/protein sequences from several organisms, and find out their relative postions in phylogenic tree.
Once SeaView is installed, you can open the on-line help window through the 'Help' button to learn how to use SeaView.
Example mase files can be found at:
ftp://pbil.univ-lyon1.fr/pub/mol\_phylogeny/seaview/
In the other systems
The newest version among them is 5.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/seaview | 5.1,1 newest | none known | - | [email protected] | 2026-07-26 |
| DragonFly | biology/seaview | 5.1,1 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/seaview | 5.1,1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/seaview | 5.1,1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install seaviewFrom the ports tree:
cd /usr/ports/biology/seaview/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= seaview>0:biology/seaviewPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 5.1,1 | 5.1,1 | 5.0.5,1 | 5.1,1 | 5.1,1 |
| FreeBSD:14:quarterly | 5.1,1 | 5.1,1 | n/a | 5.1,1 | 5.1,1 |
| FreeBSD:15:latest | 5.1,1 | 5.1,1 | n/a | 5.1,1 | 5.1,1 |
| FreeBSD:15:quarterly | 5.1,1 | 5.1,1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 5.1,1 | 5.1,1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
As this port's Makefile names them.
Library 3
libfltk.so: x11-toolkits/fltklibfontconfig.so: x11-fonts/fontconfiglibpng.so: graphics/png
The full lists below include those, and their dependencies in turn.
Build dependencies 23
- archivers/brotli
- devel/gettext-runtime
- devel/gmake
- graphics/jpeg-turbo
- graphics/libGLU
- graphics/libglvnd
- graphics/png
- print/freetype2
- print/indexinfo
- textproc/expat2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-toolkits/fltk
- x11/libX11
- x11/libXau
- x11/libXcursor
- x11/libXdmcp
- x11/libXext
- x11/libXfixes
- x11/libXinerama
- x11/libXrender
- x11/libxcb
- x11/xorgproto
Run dependencies 22
- archivers/brotli
- devel/gettext-runtime
- graphics/jpeg-turbo
- graphics/libGLU
- graphics/libglvnd
- graphics/png
- print/freetype2
- print/indexinfo
- textproc/expat2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-toolkits/fltk
- x11/libX11
- x11/libXau
- x11/libXcursor
- x11/libXdmcp
- x11/libXext
- x11/libXfixes
- x11/libXinerama
- x11/libXrender
- x11/libxcb
- x11/xorgproto
No port depends on this one.
Configuration
No options to configure.
- USES
- gmake jpeg xorg
- Service scripts
- none
Message after installing
===> NOTICE: The seaview port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Files
Manual pages 1
- seaview(1)
pkg-plist 4
- bin/seaview
- share/man/man1/seaview.1.gz
- share/seaview/seaview.html
- share/pixmaps/seaview.xpm
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| seaview_5.1.tar.gz | 471062 | b4bf58401e30814382c825b13a4c3eea8ca29c314ed5c4a1f43459b78ed6f98b |
Master sites 1
- ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/