biology/vcftools 0.1.17 FreeBSD
Tools for working with VCF genomics files
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- LGPL3
- Categories
- biology
- Package size
- 382.7 KiB, 1186.8 KiB installed
Description
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/vcftools | 0.1.17 |
| DragonFly | biology/vcftools | 0.1.16_2 |
Install
Binary package:
pkg install vcftoolsFrom the ports tree:
cd /usr/ports/biology/vcftools/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= vcftools>0:biology/vcftoolsPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.1.17 | 0.1.17 | 0.1.16 | 0.1.17 | 0.1.17 |
| FreeBSD:14:quarterly | 0.1.17 | 0.1.17 | n/a | 0.1.17 | 0.1.17 |
| FreeBSD:15:latest | 0.1.17 | 0.1.17 | n/a | 0.1.17 | 0.1.17 |
| FreeBSD:15:quarterly | 0.1.17 | 0.1.17 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.1.17 | 0.1.17 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 9
Run dependencies 1
No port depends on this one.
Configuration
No options to configure.
- USES
- autoreconf cpe gmake perl5 pkgconfig
- Service scripts
- none
Files
Manual pages 1
- vcftools(1)
pkg-plist 29
- bin/fill-aa
- bin/fill-an-ac
- bin/fill-fs
- bin/fill-ref-md5
- bin/vcf-annotate
- bin/vcf-compare
- bin/vcf-concat
- bin/vcf-consensus
- bin/vcf-contrast
- bin/vcf-convert
- bin/vcf-fix-newlines
- bin/vcf-fix-ploidy
- bin/vcf-indel-stats
- bin/vcf-isec
- bin/vcf-merge
- bin/vcf-phased-join
- bin/vcf-query
- bin/vcf-shuffle-cols
- bin/vcf-sort
- bin/vcf-stats
- bin/vcf-subset
- bin/vcf-to-tab
- bin/vcf-tstv
- bin/vcf-validator
- bin/vcftools
- %%SITE_PERL%%/FaSlice.pm
- %%SITE_PERL%%/Vcf.pm
- %%SITE_PERL%%/VcfStats.pm
- share/man/man1/vcftools.1.gz
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| vcftools-vcftools-v0.1.17_GH0.tar.gz | 247685 | 00b54fc7349179c2efbdab0e4dcb65a69e7b0ab0d0d29b59cc823140d0b40bff |