BSD Ports

biology/vt 0.57721_3 FreeBSD

Discovers short variants from Next Generation Sequencing data

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
2414383046
License
MIT
Categories
biology
Package size
676.8 KiB, 1817.0 KiB installed

Description

vt is a variant tool set that discovers short variants from Next Generation Sequencing data.

In the other systems

SystemPortVersion
FreeBSDbiology/vt0.57721_3
DragonFlybiology/vt0.57721_3

Install

Binary package:

pkg install vt

From the ports tree:

cd /usr/ports/biology/vt/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	vt>0:biology/vt

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest0.57721_30.57721_30.57721_3-0.57721_3
FreeBSD:14:quarterly0.57721_30.57721_3n/a-0.57721_3
FreeBSD:15:latest0.57721_30.57721_3n/a-0.57721_3
FreeBSD:15:quarterly0.57721_30.57721_3n/an/an/a
FreeBSD:16:latest0.57721_30.57721_3n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

As this port's Makefile names them.

Library 4

The full lists below include those, and their dependencies in turn.

Build dependencies 15
Run dependencies 13
Required by 1

Configuration

No options to configure.

USES
compiler:c++0x gmake ssl
Service scripts
none

Message after installing

===>   NOTICE:

The vt port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1
FileSizeSHA256
atks-vt-0.57721_GH0.tar.gz2.0925247e+078f06d464ec5458539cfa30f81a034f47fe7f801146fe8ca80c14a3816b704e17

Commit history 1

DateCommitCreditsLog message
2414383046 Jason W. Bacon Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.