BSD Portsbiology/barrnap 0.9 DragonFly
BAsic Rapid Ribosomal RNA Predictor
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology, science
- Package size
- 497.4 KiB, 3112.8 KiB installed
Description
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.
In the other systems
The newest version among them is 1.10.6, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/barrnap | 0.9 | none known | - | [email protected] | - |
| FreeBSD | biology/barrnap | 1.10.6 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/barrnap | 1.10.6 newest | no data | - | [email protected] | - |
| GhostBSD | biology/barrnap | 1.10.6 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install barrnapFrom DPorts:
cd /usr/dports/biology/barrnap && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 3
No port depends on this one.