BSD Ports

biology/exonerate 2.4.0_1 DragonFly

Generic tool for sequence alignment

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
GPLv3
Categories
biology
Package size
1279.5 KiB, 8209.2 KiB installed

Description

Exonerate is a tool for various types of pairwise sequence comparison. It allows us to align sequences using many alignment models including est2genome, protein2genome, and so on.

Citation:

Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31.

In the other systems

The newest version among them is 2.4.0, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
DragonFlybiology/exonerate2.4.0_1 newestnone known-[email protected]-
FreeBSDbiology/exonerate2.4.0_2 newestnone known-[email protected]2026-08-19
NetBSDwip/exonerate by name2.2.0 behind since 2026-08-19none known-[email protected]-
HardenedBSDbiology/exonerate2.4.0_2 newestno data-[email protected]-
GhostBSDbiology/exonerate2.4.0_2 newestno data-[email protected]-

Compare across BSDs

Install

Binary package:

pkg install exonerate

From DPorts:

cd /usr/dports/biology/exonerate && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Run dependencies 2

No port depends on this one.

Configuration

No options to configure.

Service scripts
none

Message after installing

===>   NOTICE:

The exonerate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing