BSD Portsbiology/fasta3 36.3.8_1 DragonFly
Collection of programs for searching DNA and protein databases
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- Fasta
- Categories
- biology
- Package size
- 652.5 KiB, 5685.1 KiB installed
Description
Version 3 of the FASTA packages contains many programs for searching DNA and protein databases and one program (prss3) for evaluating statistical significance from randomly shuffled sequences. Several additional analysis programs, including programs that produce local alignments, are available as part of version 2 of the FASTA package, which is available as the port biology/fasta.
FASTA is described in: W. R. Pearson and D. J. Lipman (1988), "Improved Tools for Biological Sequence Analysis", PNAS 85:2444-2448; W. R. Pearson (1996) "Effective protein sequence comparison" Meth. Enzymol. 266:227-258; Pearson et. al. (1997) Genomics 46:24-36; Pearson, (1999) Meth. in Molecular Biology 132:185-219.
The FASTA3 suite is distributed freely subject to the condition that it may not be sold or incorporated into a commercial product.
In the other systems
The newest version among them is 36.3.8, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/fasta3 | 36.3.8_1 newest | none known | - | [email protected] | - |
| FreeBSD | biology/fasta3 | 36.3.8_1 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/fasta3 | 36.3.8_1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/fasta3 | 36.3.8_1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install fasta3From DPorts:
cd /usr/dports/biology/fasta3 && make install cleanDependencies
No port depends on this one.
Configuration
No options to configure.
- Service scripts
- none
Message after installing
The FASTA3 package has been successfully installed. A sample configuration file has been installed to /usr/local/etc as "fastlibs.sample". This may be renamed to "fastlibs" and edited to suit the requirements of a particular site. In order to use the FASTA3 programs, a user must set the environment variable FASTLIBS to contain the full path of the FASTA3 configuration file, e.g.: set FASTLIBS to: "/usr/local/etc/fastlibs"