BSD Portsbiology/groopm 0.3.4_8 DragonFly
Metagenomic binning suite
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology, python
- Package size
- 259.4 KiB, 1706.4 KiB installed
Description
GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.
GroopM is largely parameter-free. Use: groopm -h for more info.
In the other systems
The newest version among them is 0.3.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/groopm | 0.3.4_8 newest | none known | - | [email protected] | - |
| FreeBSD | biology/groopm | 0.3.4_8 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/groopm | 0.3.4_8 newest | no data | - | [email protected] | - |
| GhostBSD | biology/groopm | 0.3.4_8 newest | no data | - | [email protected] | - |
Version history 1
- 0.3.4
Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.
Install
Binary package:
pkg install GroopMFrom DPorts:
cd /usr/dports/biology/groopm && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 5
No port depends on this one.