BSD Portsbiology/mafft 7.267_1 DragonFly
Multiple alignment program for amino acid or nucleotide sequences
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- BSD2CLAUSE
- Categories
- biology
- Package size
- 829.6 KiB, 8192.2 KiB installed
Description
MAFFT offers a range of multiple alignment strategies, L-INS-i (accurate; recommended for <200 sequences), FFT-NS-i (standard speed and accuracy), FFT-NS-2 (fast; recommended for >2,000 sequences), etc. According to BAliBASE and other benchmark tests, L-INS-i is one of the most accurate methods currently available.
MAFFT has been described:
K. Katoh and H. Toh 2008 (Briefings in Bioinformatics 9:286-298) Recent developments in the MAFFT multiple sequence alignment program.
K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30: 3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
In the other systems
The newest version among them is 7.267, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/mafft | 7.267_1 newest | none known | - | [email protected] | - |
| FreeBSD | biology/mafft | 7.267_1 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/mafft | 7.267_1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/mafft | 7.267_1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install mafftFrom DPorts:
cd /usr/dports/biology/mafft && make install cleanDependencies
No port depends on this one.