BSD Portsbiology/minimap2 2.28_1 DragonFly
Pairwise aligner for genomic and spliced nucleotide sequences
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MIT
- Categories
- biology
- Package size
- 124.1 KiB, 441.5 KiB installed
Description
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome (2) finding overlaps between long reads with error rate up to ~15%25 (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA readsagainst a reference genome (4) aligning Illumina single- or paired-end reads (5) assembly-to-assembly alignment (6) full-genome alignment between two closely related species with divergence below ~15%25
In the other systems
The newest version among them is 2.31, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/minimap2 | 2.28_1 | none known | - | [email protected] | - |
| FreeBSD | biology/minimap2 | 2.31 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | biology/minimap2 | 2.28nb1 | none known | - | [email protected] | - |
| HardenedBSD | biology/minimap2 | 2.31 newest | no data | - | [email protected] | - |
| GhostBSD | biology/minimap2 | 2.31 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install minimap2From DPorts:
cd /usr/dports/biology/minimap2 && make install cleanDependencies
No port depends on this one.