BSD Portsbiology/mmseqs2 17.b804.f DragonFly
Ultra fast and sensitive sequence search and clustering suite
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology
- Package size
- 3519.1 KiB, 11262.7 KiB installed
Description
MMseqs2 (Many-against-Many searching) is a software suite to search and cluster huge sequence sets. MMseqs2 is designed to run on multiple cores and servers, making it highly scalable. MMseqs2 matches the sensitivity of BLAST, but runs orders of magnitude faster.
In the other systems
| System | Port | Version |
|---|---|---|
| DragonFly | biology/mmseqs2 | 17.b804.f |
| FreeBSD | biology/mmseqs2 | 17.b804.f |
| HardenedBSD | biology/mmseqs2 | 17.b804.f |
| GhostBSD | biology/mmseqs2 | 17.b804.f |
Install
Binary package:
pkg install MMseqs2From DPorts:
cd /usr/dports/biology/mmseqs2 && make install cleanDependencies
No port depends on this one.
Configuration
No options to configure.
- Service scripts
- none
Message after installing
MMseqs2 can benefit greatly from advanced CPU features such as AVX.
Consider setting additional optimizations such as -march=native (e.g.
in make.conf) and reinstalling from source via
cd ${PORTSDIR}/biology/mmseqs2 && make install