biology/mmseqs2 17.b804.f
Ultra fast and sensitive sequence search and clustering suite
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
98c25a5a1f- License
- GPLv3
- Categories
- biology
- Package size
- 3431.8 KiB, 10594.0 KiB installed
Description
MMseqs2 (Many-against-Many searching) is a software suite to search and cluster huge sequence sets. MMseqs2 is designed to run on multiple cores and servers, making it highly scalable. MMseqs2 matches the sensitivity of BLAST, but runs orders of magnitude faster.
Install
As a binary package — by origin, or by package name:
pkg install biology/mmseqs2
pkg install MMseqs2From the ports tree:
cd /usr/ports/biology/mmseqs2/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= MMseqs2>0:biology/mmseqs2Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 17.b804.f | 17.b804.f | - | - | - |
| FreeBSD:14:quarterly | 17.b804.f | 17.b804.f | n/a | - | - |
| FreeBSD:15:latest | 17.b804.f | 17.b804.f | n/a | - | - |
| FreeBSD:15:quarterly | 17.b804.f | 17.b804.f | n/a | n/a | n/a |
| FreeBSD:16:latest | 17.b804.f | 17.b804.f | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
zstd>0: archivers/zstd
The full lists below include those, and their dependencies in turn.
All build dependencies 18
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake perl5 shebangfix
- Service scripts
- none
Message after installing
MMseqs2 can benefit greatly from advanced CPU features such as AVX.
Consider setting additional optimizations such as -march=native (e.g.
in make.conf) and reinstalling from source via
cd ${PORTSDIR}/biology/mmseqs2 && make install
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| soedinglab-MMseqs2-17-b804f_GH0.tar.gz | 1.3364452e+07 | 300ebd14bf4e007b339037e5f73d8ff9c4e34f8495204c4a8c59c7672b689db2 |