BSD Portsbiology/ngs-sdk 3.0.1 DragonFly
Tools and libraries for using data in the INSDC Sequence Read Archives
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- PD
- Categories
- biology
- Package size
- 117.3 KiB, 1062.0 KiB installed
Description
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb.
The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java.
In the other systems
The newest version among them is 3.0.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/ngs-sdk | 3.0.1 newest | none known | - | [email protected] | - |
| FreeBSD | biology/ngs-sdk | 3.0.1 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/ngs-sdk | 3.0.1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/ngs-sdk | 3.0.1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install ngs-sdkFrom DPorts:
cd /usr/dports/biology/ngs-sdk && make install cleanDependencies
No port depends on this one.