biology/py-orange3-bioinformatics 4.8.4_1 DragonFly

Orange add-on providing common functionality for bioinformatics

System: DragonFly
Repository: DPorts
Maintainer: [email protected] (as in FreeBSD)
License: GPLv3
Categories: biology, python
Package size: 590.8 KiB, 15740.9 KiB installed

Description

Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter is also suitable for non-programmers.

Orange Bioinformatics provides access to publicly available data, like GEO data sets, GO and KEGG. All features can be combined with powerful visualization, network exploration and data mining techniques from the Orange data mining framework.

Install

Binary package:

pkg install py311-orange3-bioinformatics

From DPorts:

cd /usr/dports/biology/py-orange3-bioinformatics && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/py-orange3-bioinformatics"]
  me --> d0["biology/py-Genesis-PyAPI"]
  me --> d1["biology/py-resdk"]
  me --> d2["lang/python311"]
  me --> d3["math/py-point-annotator"]
  me --> d4["math/py-pyclipper"]
  me --> d5["misc/orange3"]
  me --> d6["misc/py-serverfiles"]
  me --> d7["science/py-scipy"]
  me -.-> dmore(["2 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 10

No port depends on this one.