BSD Portsbiology/smithwaterman g20160702 DragonFly
Smith-waterman-gotoh alignment algorithm
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv2
- Categories
- biology
- Package size
- 74.1 KiB, 390.3 KiB installed
Description
The Smith-Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings of nucleic acid sequences or protein sequences. Instead of looking at the entire sequence, the Smith-Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. Gotoh and Atschul added optimizations making it practical for larger problems.
In the other systems
The newest version among them is g20160702, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/smithwaterman | g20160702 newest | none known | - | [email protected] | - |
| FreeBSD | biology/smithwaterman | g20160702 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | wip/smithwaterman by name | 0.0.0.20160702 | none known | - | [email protected] | - |
| HardenedBSD | biology/smithwaterman | g20160702 newest | no data | - | [email protected] | - |
| GhostBSD | biology/smithwaterman | g20160702 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install smithwatermanFrom DPorts:
cd /usr/dports/biology/smithwaterman && make install cleanDependencies
No port depends on this one.