BSD Ports

biology/subread 2.1.0 DragonFly

High-performance read alignment, quantification and mutation discovery

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
GPLv3
Categories
biology
Package size
634.7 KiB, 7412.4 KiB installed

Description

The Subread package comprises a suite of software programs for processing next-gen sequencing read data including:

Subread: a general-purpose read aligner which can align both genomic
DNA-seq and RNA-seq reads. It can also be used to discover genomic
mutations including short indels and structural variants.

Subjunc: a read aligner developed for aligning RNA-seq reads and for the
detection of exon-exon junctions. Gene fusion events can be detected as
well.

featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.

Sublong: a long-read aligner that is designed based on seed-and-vote.

exactSNP: a SNP caller that discovers SNPs by testing signals against local
background noises.

In the other systems

The newest version among them is 2.1.1, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
DragonFlybiology/subread2.1.0 behind since 2026-08-27none known-[email protected]-
FreeBSDbiology/subread2.1.1 newestnone known-[email protected]2026-10-08
NetBSDwip/subread by name2.1.0 behind since 2026-08-27none known-[email protected]-
HardenedBSDbiology/subread2.1.1 newestno data-[email protected]-
GhostBSDbiology/subread2.1.1 newestno data-[email protected]-

Compare across BSDs

Install

Binary package:

pkg install subread

From DPorts:

cd /usr/dports/biology/subread && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Run dependencies 1

No port depends on this one.