biology/subread 2.1.0 DragonFly
High-performance read alignment, quantification and mutation discovery
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology
- Package size
- 634.7 KiB, 7412.4 KiB installed
Description
The Subread package comprises a suite of software programs for processing next-gen sequencing read data including:
Subread: a general-purpose read aligner which can align both genomic
DNA-seq and RNA-seq reads. It can also be used to discover genomic
mutations including short indels and structural variants.
Subjunc: a read aligner developed for aligning RNA-seq reads and for the
detection of exon-exon junctions. Gene fusion events can be detected as
well.
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: a SNP caller that discovers SNPs by testing signals against local
background noises.
In the other systems
The newest version among them is 2.1.1, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/subread | 2.1.0 behind since 2026-08-27 | none known | - | [email protected] | - |
| FreeBSD | biology/subread | 2.1.1 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | wip/subread by name | 2.1.0 behind since 2026-08-27 | none known | - | [email protected] | - |
| HardenedBSD | biology/subread | 2.1.1 newest | no data | - | [email protected] | - |
| GhostBSD | biology/subread | 2.1.1 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install subread
From DPorts:
cd /usr/dports/biology/subread && make install clean
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 1
No port depends on this one.