BSD Portsbiology/trimadap 0.1.4 DragonFly
Trim adapter sequences from Illumina data using heuristic rules
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MIT
- Categories
- biology
- Package size
- 11.0 KiB, 23.6 KiB installed
Description
Trimadap is a small tool to trim adapter sequences from Illumina data. It performs SSE2-SW between each read and each adapter sequence and identifies adapter sequences with a few heuristic rules which can be found in the ta_trim1() function in trimadap-mt.c. The default adapters it uses are included in illumina.txt. These are typical Illumina adapters from paired-end sequencing.
In the other systems
The newest version among them is 0.1.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/trimadap | 0.1.4 newest | none known | - | [email protected] | - |
| FreeBSD | biology/trimadap | 0.1.4 newest | none known | - | [email protected] | 2026-10-08 |
| NetBSD | wip/trimadap by name | 0.1.4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/trimadap | 0.1.4 newest | no data | - | [email protected] | - |
| GhostBSD | biology/trimadap | 0.1.4 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install trimadapFrom DPorts:
cd /usr/dports/biology/trimadap && make install cleanDependencies
No port depends on this one.