BSD Portsbiology/velvet 1.2.10_2 DragonFly
Sequence assembler for very short reads
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- Categories
- biology
- Package size
- 613.1 KiB, 935.4 KiB installed
Description
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).
Citation:
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)
In the other systems
The newest version among them is 1.2.10, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/velvet | 1.2.10_2 newest | none known | - | [email protected] | - |
| FreeBSD | biology/velvet | 1.2.10_2 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/velvet | 1.2.10_2 newest | no data | - | [email protected] | - |
| GhostBSD | biology/velvet | 1.2.10_2 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install velvetFrom DPorts:
cd /usr/dports/biology/velvet && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 2
No port depends on this one.