BSD Portsmisc/snakemake 6.15.5_4 DragonFly
Workflow management system
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- MIT
- Categories
- misc, python
- Package size
- 600.4 KiB, 4193.9 KiB installed
Description
Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
In the other systems
| System | Port | Version |
|---|---|---|
| DragonFly | misc/snakemake | 6.15.5_4 |
| FreeBSD | misc/snakemake | 9.27.0 |
Install
Binary package:
pkg install snakemakeFrom DPorts:
cd /usr/dports/misc/snakemake && make install cleanDependencies
Run dependencies 20
- devel/py-appdirs
- devel/py-configargparse
- devel/py-connection_pool
- devel/py-datrie
- devel/py-gitpython
- devel/py-jsonschema
- devel/py-nbformat
- devel/py-pyyaml
- devel/py-ratelimiter
- devel/py-stopit
- devel/py-tabulate
- devel/py-toposort
- devel/py-wrapt
- lang/python311
- math/py-PuLP
- net/py-smart-open
- sysutils/py-filelock
- sysutils/py-psutil
- textproc/py-docutils
- www/py-requests
No port depends on this one.