BSD Portsscience/afni 25.0.13 DragonFly
Advanced Functional Neuro Imaging
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv2
- Categories
- biology, graphics, perl5, python, science
- Package size
- 411431.4 KiB, 2118138.5 KiB installed
Description
AFNI (Analysis of Functional Neuro Imaging) is a tool for analyzing 3-dimensional images, especially functional MRI images used in brain mapping research.
In the other systems
| System | Port | Version |
|---|---|---|
| DragonFly | science/afni | 25.0.13 |
| FreeBSD | science/afni | 26.3.04 |
| GhostBSD | science/afni | 26.2.08 |
Install
Binary package:
pkg install afniFrom DPorts:
cd /usr/dports/science/afni && make install cleanDependencies
Run dependencies 40
- devel/gettext-runtime
- devel/glib20
- devel/icu
- devel/pcre2
- devel/readline
- graphics/jpeg-turbo
- graphics/libGLU
- graphics/libglvnd
- graphics/netpbm
- graphics/png
- lang/f2c
- lang/perl5.36
- lang/python311
- math/R
- math/R-cran-lme4
- math/R-cran-psych
- math/gsl
- math/qhull
- multimedia/ffmpeg
- print/freetype2
- science/R-cran-snow
- science/netcdf-fortran
- sysutils/endian
- textproc/expat2
- textproc/libxml2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/open-motif
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXi
- x11/libXpm
- x11/libXrender
- x11/libxcb
No port depends on this one.
Configuration
No options to configure.
- Service scripts
- none
Message after installing
For quick info, run "man afni".
For AFNI configuration and usage, please visit the AFNI WEB site at
http://afni.nimh.nih.gov.
---
SUMA requires the nVidia graphics driver (x11/nvidia-driver*)
or DRI (graphics/dri).
---
FreeBSD ports for other AFNI versions are available at
https://github.com/outpaddling/freebsd-ports-wip
---
For large 3dDeconvolve analyses, you may need to increase one or
more of the following shared memory limits using sysctl (and
/etc/sysctl.conf to make the changes permanent):
kern.ipc.shmall
kern.ipc.shmmax
kern.ipc.shmmin
kern.ipc.shmmni
kern.ipc.shmseg
---
AFNI_PLUGIN_PATH should be set to /usr/local/lib/afni:/usr/local/share/afni
AFNI_GLOBAL_SESSION should be set to /usr/local/share/afni.
You can do this by sourcing /usr/local/etc/mri/afni.profiles for
Bourne-style shells or or /usr/local/etc/mri/afni.cshrc for C-style shells.