BSD Ports

science/jmol 16.1.25_1 DragonFly

Java 3D viewer for chemical structures

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
LGPL21
Categories
java, science
Package size
55387.8 KiB, 112844.6 KiB installed

Description

Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).

See also: https://sourceforge.net/projects/jmol/

In the other systems

SystemPortVersion
DragonFlyscience/jmol16.1.25_1
FreeBSDscience/jmol16.1.25_3
HardenedBSDscience/jmol16.1.25_3
GhostBSDscience/jmol16.1.25_3

Install

Binary package:

pkg install Jmol

From DPorts:

cd /usr/dports/science/jmol && make install clean

Dependencies

Run dependencies 1

No port depends on this one.