graphics/raster3d 3.0.7_5 FreeBSD
Set of tools for generating raster images of proteins and molecules
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- ART20
- Categories
- graphics, biology
- Package size
- 1554.8 KiB, 3848.0 KiB installed
Description
Raster3D is a set of tools for generating high quality raster images of proteins or other molecules.
The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficient software Z-buffer algorithm which is independent of any graphics hardware.
Ancillary programs process atomic coordinates from PDB files into rendering descriptions for pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc.
Raster3D can also be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | graphics/raster3d | 3.0.7_5 |
| DragonFly | graphics/raster3d | 3.0.7_5 |
Install
Binary package:
pkg install raster3d
From the ports tree:
cd /usr/ports/graphics/raster3d/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= raster3d>0:graphics/raster3d
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.0.7_5 | 3.0.7_5 | - | 3.0.7_5 | 3.0.7_5 |
| FreeBSD:14:quarterly | 3.0.7_5 | 3.0.7_5 | n/a | 3.0.7_5 | 3.0.7_5 |
| FreeBSD:15:latest | 3.0.7_5 | 3.0.7_5 | n/a | 3.0.7_5 | 3.0.7_5 |
| FreeBSD:15:quarterly | 3.0.7_5 | 3.0.7_5 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.0.7_5 | 3.0.7_5 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libgd.so: graphics/gdlibtiff.so: graphics/tiff
The full lists below include those, and their dependencies in turn.
Build dependencies 22
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- devel/binutils
- devel/gettext-runtime
- graphics/gd
- graphics/giflib
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lerc
- graphics/png
- graphics/tiff
- graphics/webp
- lang/gcc14
- math/gmp
- math/mpc
- math/mpfr
- print/freetype2
- print/indexinfo
- textproc/expat2
- x11-fonts/fontconfig
Run dependencies 129
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- audio/lame
- audio/libogg
- audio/libvorbis
- audio/mpg123
- audio/opus
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/libdaemon
- devel/libepoll-shim
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libltdl
- devel/libpciaccess
- devel/libunistring
- devel/llvm12
- devel/pcre2
- devel/pkgconf
- devel/py-packaging
- devel/readline
- devel/sdl20
- devel/spirv-llvm-translator
- dns/libidn
- dns/libidn2
- graphics/ImageMagick6
- graphics/gd
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libdrm
- graphics/libglvnd
- graphics/libheif
- graphics/liblqr-1
- graphics/libraw
- graphics/libwmf
- graphics/mesa-libs
- graphics/openjpeg
- graphics/openjph
- graphics/png
- graphics/poppler-data
- graphics/spirv-tools
- graphics/tiff
- graphics/vulkan-loader
- graphics/wayland
- graphics/webp
- lang/gcc14
- lang/perl5.42
- lang/python312
- lang/python315
- math/fftw3
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- misc/hwdata
- misc/shared-mime-info
- multimedia/aom
- multimedia/dav1d
- multimedia/ffmpeg
- multimedia/libass
- multimedia/libbluray
- multimedia/libdvdcss
- multimedia/libdvdnav
- multimedia/libdvdread
- multimedia/libudfread
- multimedia/libvpx
- multimedia/libx264
- multimedia/openh264
- multimedia/svt-av1
- multimedia/vmaf
- multimedia/x265
- net/avahi-app
- print/cups
- print/freetype2
- print/ghostscript10
- print/gsfonts
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/gnutls
- security/libtasn1
- security/nettle
- security/p11-kit
- shells/bash
- sysutils/gnome_subr
The first 100 are listed.
Required by 1
Configuration
Options name: graphics_raster3d
| Option | Default | Description |
|---|---|---|
| DOCS | off | Build and/or install documentation |
| EXAMPLES | off | Build and/or install examples |
| IMAGEMAGICK | on | ImageMagick image processing support |
- USES
- fortran
- Service scripts
- none
Files
Manual pages 12
- avs2ps(l)
- balls(l)
- label3d(l)
- normal3d(l)
- r3d_objects(l)
- r3dtops(l)
- rastep(l)
- raster3d(l)
- render(l)
- ribbon(l)
- rods(l)
- stereo3d(l)
pkg-plist 74
- bin/avs2ps
- bin/balls
- bin/rastep
- bin/render
- bin/ribbon
- bin/rings3d
- bin/rods
- bin/normal3d
- bin/label3d
- bin/stereo3d
- bin/worms
- share/man/manl/avs2ps.l.gz
- share/man/manl/balls.l.gz
- share/man/manl/label3d.l.gz
- share/man/manl/r3d_objects.l.gz
- share/man/manl/r3dtops.l.gz
- share/man/manl/rastep.l.gz
- share/man/manl/raster3d.l.gz
- share/man/manl/render.l.gz
- share/man/manl/ribbon.l.gz
- share/man/manl/rods.l.gz
- share/man/manl/normal3d.l.gz
- share/man/manl/stereo3d.l.gz
- share/raster3d/materials/2-sided.r3d
- share/raster3d/materials/backdrop_1.r3d
- share/raster3d/materials/backdrop_2.r3d
- share/raster3d/materials/backdrop_3.r3d
- share/raster3d/materials/backface.r3d
- share/raster3d/materials/basement.r3d
- share/raster3d/materials/black.r3d
- share/raster3d/materials/blue.r3d
- share/raster3d/materials/bronze.r3d
- share/raster3d/materials/brown.r3d
- share/raster3d/materials/cpk.colours
- share/raster3d/materials/cyan.r3d
- share/raster3d/materials/darkblue.r3d
- share/raster3d/materials/darkgreen.r3d
- share/raster3d/materials/darkgrey.r3d
- share/raster3d/materials/darkred.r3d
- share/raster3d/materials/dna.colours
- share/raster3d/materials/end_material.r3d
- share/raster3d/materials/floor.r3d
- share/raster3d/materials/fog.r3d
- share/raster3d/materials/forestgreen.r3d
- share/raster3d/materials/gold.r3d
- share/raster3d/materials/green.r3d
- share/raster3d/materials/grey.r3d
- share/raster3d/materials/lightblue.r3d
- share/raster3d/materials/lightgreen.r3d
- share/raster3d/materials/lightgrey.r3d
- share/raster3d/materials/lightorange.r3d
- share/raster3d/materials/lightyellow.r3d
- share/raster3d/materials/lilac.r3d
- share/raster3d/materials/matte.r3d
- share/raster3d/materials/moccasin.r3d
- share/raster3d/materials/mycolors.pdb
- share/raster3d/materials/orange.r3d
- share/raster3d/materials/orchid.r3d
- share/raster3d/materials/pearl.r3d
- share/raster3d/materials/pink.r3d
- share/raster3d/materials/purple.r3d
- share/raster3d/materials/red.r3d
- share/raster3d/materials/residue.colours
- share/raster3d/materials/shapely.colours
- share/raster3d/materials/silver.r3d
- share/raster3d/materials/translucent.r3d
- share/raster3d/materials/translucent_30.r3d
- share/raster3d/materials/translucent_60.r3d
- share/raster3d/materials/translucent_90.r3d
- share/raster3d/materials/transparent.r3d
- share/raster3d/materials/transparent0.r3d
- share/raster3d/materials/transparent1.r3d
- share/raster3d/materials/white.r3d
- share/raster3d/materials/yellow.r3d
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| Raster3D_3.0-7.tar.gz | 1.729798e+06 | f566b499fee341db3a95229672c6afdbdb69da7faabdbe34f6e0d332d766160c |
Master sites 1
- http://skuld.bmsc.washington.edu/raster3d/
Commit history 0
No commits in the history this site was built from.