math/R-cran-corpcor 1.6.10 FreeBSD
Efficient estimation of covariance and partial correlation
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Port added
- Last update
- Commit
0638970079- License
- GPLv3+
- Categories
- math
Description
Implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage for variances and correlations. The approach is both computationally as well as statistically very efficient, it is applicable to "small n, large p" data, and always returns a positive definite and well-conditioned covariance matrix. In addition to inferring the covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances. The inverse of the covariance and correlation matrix can be efficiently computed, as well as any arbitrary power of the shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing the pseudoinverse, and for checking the rank and positive definiteness of a matrix.
Version history 1
Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.
Install
Binary package:
pkg install R-cran-corpcor
From the ports tree:
cd /usr/ports/math/R-cran-corpcor/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= R-cran-corpcor>0:math/R-cran-corpcor
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | - | - | - | 1.6.10 |
| FreeBSD:14:quarterly | - | - | n/a | - | - |
| FreeBSD:15:latest | - | 1.6.10 | n/a | - | - |
| FreeBSD:15:quarterly | - | - | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 1.6.10 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 85
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Run dependencies 85
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
No port depends on this one.
Configuration
No options to configure.
- USES
- cran:auto-plist
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| corpcor_1.6.10.tar.gz | 22678 | 71a04c503c93ec95ddde09abe8c7ddeb36175b7da76365a14b27066383e10e09 |