BSD Ports

math/R-cran-corpcor 1.6.10 FreeBSD

Efficient estimation of covariance and partial correlation

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Port added
Last update
Commit
0638970079
License
GPLv3+
Categories
math

Description

Implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage for variances and correlations. The approach is both computationally as well as statistically very efficient, it is applicable to "small n, large p" data, and always returns a positive definite and well-conditioned covariance matrix. In addition to inferring the covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances. The inverse of the covariance and correlation matrix can be efficiently computed, as well as any arbitrary power of the shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing the pseudoinverse, and for checking the rank and positive definiteness of a matrix.

Version history 1

  1. 1.6.10 0638970079

Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.

Install

Binary package:

pkg install R-cran-corpcor

From the ports tree:

cd /usr/ports/math/R-cran-corpcor/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	R-cran-corpcor>0:math/R-cran-corpcor

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest----1.6.10
FreeBSD:14:quarterly--n/a--
FreeBSD:15:latest-1.6.10n/a--
FreeBSD:15:quarterly--n/an/an/a
FreeBSD:16:latest-1.6.10n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 85
Run dependencies 85

No port depends on this one.

Configuration

No options to configure.

USES
cran:auto-plist
Service scripts
none

Files

distinfo 1
FileSizeSHA256
corpcor_1.6.10.tar.gz2267871a04c503c93ec95ddde09abe8c7ddeb36175b7da76365a14b27066383e10e09

Commit history 1

DateCommitCreditsLog message
0638970079 Christos Longros math/R-cran-corpcor: New port: Efficient estimation of covariance and partial correlation
Implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage for variances and correlations. The approach is both computationally as well as statistically very efficient, it is applicable to "small n, large p" data, and always returns a positive definite and well-conditioned covariance matrix. In addition to inferring the covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances. The inverse of the covariance and correlation matrix can be efficiently computed, as well as any arbitrary power of the shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing the pseudoinverse, and for checking the rank and positive …