math/R-cran-metafor 5.2.1 FreeBSD
Meta-analysis package for R
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Port added
- Last update
- Commit
eab8b0d82c- License
- GPLv2+
- Categories
- math
Description
A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit equal-, fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, bubble, and GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted. An introduction to the package can be found in Viechtbauer (2010) <doi:10.18637/jss.v036.i03>.
Install
Binary package:
pkg install R-cran-metafor
From the ports tree:
cd /usr/ports/math/R-cran-metafor/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= R-cran-metafor>0:math/R-cran-metafor
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | - | - | - | 5.2.1 |
| FreeBSD:14:quarterly | - | - | n/a | - | - |
| FreeBSD:15:latest | - | 5.2.1 | n/a | - | - |
| FreeBSD:15:quarterly | - | - | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 5.2.1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 5
R-cran-digest>0: security/R-cran-digestR-cran-mathjaxr>0: math/R-cran-mathjaxrR-cran-metadat>0: math/R-cran-metadatR-cran-numDeriv>0: math/R-cran-numDerivR-cran-pbapply>0: devel/R-cran-pbapply
Runtime 5
R-cran-digest>0: security/R-cran-digestR-cran-mathjaxr>0: math/R-cran-mathjaxrR-cran-metadat>0: math/R-cran-metadatR-cran-numDeriv>0: math/R-cran-numDerivR-cran-pbapply>0: devel/R-cran-pbapply
The full lists below include those, and their dependencies in turn.
Build dependencies 91
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/R-cran-pbapply
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/R-cran-mathjaxr
- math/R-cran-metadat
- math/R-cran-numDeriv
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/R-cran-digest
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Run dependencies 91
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/R-cran-pbapply
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/R-cran-mathjaxr
- math/R-cran-metadat
- math/R-cran-numDeriv
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/R-cran-digest
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Required by 1
Configuration
No options to configure.
- USES
- cran:auto-plist
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| metafor_5.2-1.tar.gz | 5.037964e+06 | 25c421cf52279294b11ab3166adfeb327dd22034a03a46487f081a19a163339b |