BSD Portsmath/stan 2.39.0 FreeBSD
C++ package for Bayesian inference, maximum likelihood estimation, etc
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD3CLAUSE
- Categories
- math
- Package size
- 143.0 KiB, 1085.8 KiB installed
Description
Stan is a state-of-the-art platform for statistical modeling and high-performance statistical computation. Thousands of users rely on Stan for statistical modeling, data analysis, and prediction in the social, biological, and physical sciences, engineering, and business.
Users specify log density functions in Stan's probabilistic programming language and get: * full Bayesian statistical inference with MCMC sampling (NUTS, HMC) * approximate Bayesian inference with variational inference (ADVI) * penalized maximum likelihood estimation with optimization (L-BFGS)
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | math/stan | 2.39.0 |
| OpenBSD | sysutils/stan | 0.4.1p2 |
| NetBSD | devel/stan | 0.2.0.0nb3 |
| DragonFly | math/stan | 2.34.1 |
Install
Binary package:
pkg install stanFrom the ports tree:
cd /usr/ports/math/stan/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= stan>0:math/stanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.39.0 | 2.39.0 | - | - | 2.39.0 |
| FreeBSD:14:quarterly | 2.39.0 | 2.39.0 | n/a | 2.34.1 | 2.39.0 |
| FreeBSD:15:latest | 2.39.0 | 2.39.0 | n/a | - | 2.34.1 |
| FreeBSD:15:quarterly | 2.39.0 | 2.39.0 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.39.0 | 2.39.0 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Runtime 1
stanmath>0: math/stanmath
Test 1
gmake: devel/gmake
The full lists below include those, and their dependencies in turn.
Build dependencies 3
Run dependencies 21
No port depends on this one.
Configuration
No options to configure.
- USES
- eigen:3,run gmake python:test shebangfix
- Service scripts
- none
Files
pkg-plist 195
- include/stan/analyze/mcmc/autocovariance.hpp
- include/stan/analyze/mcmc/check_chains.hpp
- include/stan/analyze/mcmc/compute_effective_sample_size.hpp
- include/stan/analyze/mcmc/compute_potential_scale_reduction.hpp
- include/stan/analyze/mcmc/ess.hpp
- include/stan/analyze/mcmc/mcse.hpp
- include/stan/analyze/mcmc/rank_normalization.hpp
- include/stan/analyze/mcmc/rhat.hpp
- include/stan/analyze/mcmc/split_chains.hpp
- include/stan/analyze/mcmc/split_rank_normalized_ess.hpp
- include/stan/analyze/mcmc/split_rank_normalized_rhat.hpp
- include/stan/callbacks/concurrent_writer.hpp
- include/stan/callbacks/interrupt.hpp
- include/stan/callbacks/json_writer.hpp
- include/stan/callbacks/logger.hpp
- include/stan/callbacks/stream_logger.hpp
- include/stan/callbacks/stream_writer.hpp
- include/stan/callbacks/structured_writer.hpp
- include/stan/callbacks/tee_writer.hpp
- include/stan/callbacks/unique_stream_writer.hpp
- include/stan/callbacks/writer.hpp
- include/stan/io/array_var_context.hpp
- include/stan/io/chained_var_context.hpp
- include/stan/io/deserializer.hpp
- include/stan/io/dump.hpp
- include/stan/io/empty_var_context.hpp
- include/stan/io/ends_with.hpp
- include/stan/io/json/json_data.hpp
- include/stan/io/json/json_data_handler.hpp
- include/stan/io/json/json_error.hpp
- include/stan/io/json/json_handler.hpp
- include/stan/io/json/rapidjson_parser.hpp
- include/stan/io/random_var_context.hpp
- include/stan/io/serializer.hpp
- include/stan/io/stan_csv_reader.hpp
- include/stan/io/validate_dims.hpp
- include/stan/io/validate_zero_buf.hpp
- include/stan/io/var_context.hpp
- include/stan/lang/rethrow_located.hpp
- include/stan/mcmc/base_adaptation.hpp
- include/stan/mcmc/base_adapter.hpp
- include/stan/mcmc/base_mcmc.hpp
- include/stan/mcmc/chains.hpp
- include/stan/mcmc/chainset.hpp
- include/stan/mcmc/covar_adaptation.hpp
- include/stan/mcmc/fixed_param_sampler.hpp
- include/stan/mcmc/hmc/base_hmc.hpp
- include/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp
- include/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp
- include/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp
- include/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp
- include/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp
- include/stan/mcmc/hmc/hamiltonians/ps_point.hpp
- include/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp
- include/stan/mcmc/hmc/hamiltonians/softabs_point.hpp
- include/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp
- include/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp
- include/stan/mcmc/hmc/integrators/base_integrator.hpp
- include/stan/mcmc/hmc/integrators/base_leapfrog.hpp
- include/stan/mcmc/hmc/integrators/expl_leapfrog.hpp
- include/stan/mcmc/hmc/integrators/impl_leapfrog.hpp
- include/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp
- include/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp
- include/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp
- include/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp
- include/stan/mcmc/hmc/nuts/base_nuts.hpp
- include/stan/mcmc/hmc/nuts/dense_e_nuts.hpp
- include/stan/mcmc/hmc/nuts/diag_e_nuts.hpp
- include/stan/mcmc/hmc/nuts/softabs_nuts.hpp
- include/stan/mcmc/hmc/nuts/unit_e_nuts.hpp
- include/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp
- include/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp
- include/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp
- include/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp
- include/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp
- include/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp
- include/stan/mcmc/hmc/static/base_static_hmc.hpp
- include/stan/mcmc/hmc/static/dense_e_static_hmc.hpp
- include/stan/mcmc/hmc/static/diag_e_static_hmc.hpp
- include/stan/mcmc/hmc/static/softabs_static_hmc.hpp
- include/stan/mcmc/hmc/static/unit_e_static_hmc.hpp
- include/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp
- include/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp
- include/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp
- include/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp
- include/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp
- include/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp
- include/stan/mcmc/hmc/xhmc/base_xhmc.hpp
The first 100 are listed.
distinfo 2
| File | Size | SHA256 |
|---|---|---|
| stan-dev-stan-v2.39.0_GH0.tar.gz | 4.682704e+06 | 8cbbf43f917977574b21fc4256161302419ab78be33404d74e7bbb8f8fafb7a8 |
| stan-dev-math-c26bd83_GH0.tar.gz | 3.0100879e+07 | 4b02d9dcdd4f7d176f7fa12e60b0a9929b17158fc9e24858912c44f7eed566b1 |
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