BSD Portsbiology/glimmer 2.13nb1 NetBSD
System for finding genes in microbial DNA
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Categories
- biology
- Package size
- 69.3 KiB, 290.5 KiB installed
Description
Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. The IMM approach uses a combination of Markov models from 1st through 8th-order, weighting each model according to its predictive power.
Install
Binary package:
pkgin install glimmerFrom pkgsrc:
cd /usr/pkgsrc/biology/glimmer && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.13nb1 |
| NetBSD 10.1 aarch64 | 2.13nb1 |
| SmartOS / illumos x86_64 | 2.13nb1 |
| macOS 15 arm64 | 2.13nb1 |
Dependencies
No port depends on this one.