BSD Portsbiology/hmmer 3.0nb1 NetBSD
Implementation of profile HMM software for protein sequence analysis
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 547.5 KiB, 4509.4 KiB installed
Description
HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes multiple sequence alignment as input and builds statistical model called "Hidden Markov Model" which can be used as a query into a sequence database to find and/or align additional homologues of the sequence family.
In the other systems
The newest version among them is 3.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | biology/hmmer | 3.0nb1 | none known | - | [email protected] | - |
| FreeBSD | biology/hmmer | 3.4 newest | none known | - | [email protected] | 2026-10-15 |
| OpenBSD | biology/hmmer | 3.1beta2p0 | no data | - | Senthil Kumar M <[email protected]> | - |
| DragonFly | biology/hmmer | 3.4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/hmmer | 3.4 newest | no data | - | [email protected] | - |
| GhostBSD | biology/hmmer | 3.4 newest | no data | - | [email protected] | - |
Install
Binary package:
pkgin install hmmerFrom pkgsrc:
cd /usr/pkgsrc/biology/hmmer && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 3.0nb1 |
| NetBSD 10.1 aarch64 | 3.0nb1 |
| SmartOS / illumos x86_64 | 3.0nb1 |
| macOS 15 arm64 | 3.0nb1 |
Dependencies
No port depends on this one.