BSD Portsbiology/mummer 3.20nb10 NetBSD
System for aligning whole genome sequences
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
e282cfb26b- Categories
- biology
- Package size
- 2757.7 KiB, 6797.7 KiB installed
Description
Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/mummer | 3.20nb10 |
| FreeBSD | biology/mummer | 4.0.1 |
| DragonFly | biology/mummer | 4.0.1 |
| HardenedBSD | biology/mummer | 4.0.1 |
| GhostBSD | biology/mummer | 4.0.1 |
Install
Binary package:
pkgin install mummerFrom pkgsrc:
cd /usr/pkgsrc/biology/mummer && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 3.20nb10 |
| NetBSD 10.1 aarch64 | 3.20nb10 |
| SmartOS / illumos x86_64 | 3.20nb10 |
| macOS 15 arm64 | 3.20nb10 |
Dependencies
Run dependencies 1
No port depends on this one.