BSD Ports

Vulnerable: version 3.2.1nb2 is affected by 10 known vulnerabilities. See below.

biology/openbabel 3.2.1nb2 NetBSD

Chemistry file translation program

System
NetBSD
Repository
pkgsrc
Maintainer
[email protected]
Last update
Commit
7b5a3977f9
License
gnu-gpl-v2
Categories
biology
Package size
3980.7 KiB, 18729.7 KiB installed

Description

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.

In the other systems

The newest version among them is 3.2.1, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
NetBSDbiology/openbabel3.2.1nb2 newest10 known-[email protected]2026-09-29
FreeBSDscience/openbabel by name3.2.1_1 newestnone known-[email protected]2026-09-29
OpenBSDmisc/openbabel by name3.2.1 newestno data-Bjorn Ketelaars <[email protected]>2026-07-12
DragonFlyscience/openbabel by name3.1.1.178_3 behind since 2026-07-12none known-[email protected]-
MidnightBSDscience/openbabel by name2.4.1_2 behind since 2026-07-12no data-[email protected]2026-09-06
HardenedBSDscience/openbabel by name3.2.1_1 newestno data-[email protected]-
GhostBSDscience/openbabel by name3.2.0 behind since 2026-07-12no data-[email protected]-

Compare across BSDs

Version history 1

  1. 3.2.1 2ed3f8cc67

Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.

Install

Binary package:

pkgin install openbabel

From pkgsrc:

cd /usr/pkgsrc/biology/openbabel && make install clean

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

RepositoryVersion
NetBSD 10.1 x86_643.2.1nb2
NetBSD 10.1 aarch643.2.1nb2
SmartOS / illumos x86_64-
macOS 15 arm643.2.1nb4

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

Dependencies

Run dependencies 5
Required by 1

Known vulnerabilities 10

1 NetBSD ports depend on it, directly or through others, and may carry the vulnerable code. The ports that need it

Commit history 5

DateCommitCreditsLog message
7b5a3977f9 wiz *: recursive bump for pcre2 10.49
204ac6b2b7 tnn *: revbump for pcre2 symbol versioning change
5e4aea17e2 wiz *: recursive bump for pcre2 10.48
d83d7cec2c adam Revbump for Boost 1.92.0
2ed3f8cc67 pin biology/openbabel: update to 3.2.1
This release reflects the latest stable version, including many bug fixes, including some potentially security related. As noted with our 3.2.0 release, we anticipate further bug-fix releases over the course of 2026 and appreciate the many contributions and reports from everyone. 🪲 Bug Fixes Fix tetrazole protonation handling in the pH model by @Jnelen in #2975 ChemDraw CDX: handle additional aromatic/fractional bond-order codes by @jlkjr in #2979 🔒 Security and Hardening Fix CVE-2026-54751: MMD parser uninitialized value use can expose prior atom data by Carmelo Lin @Carmel0 Update SECURITY.md with GitHub Security Advisory links by @ghutchis in #2968 Fix several formats with sscanf validation by @ghutchis in #2973 Fix more fuzz bugs by @ghutchis in #2977 …