BSD Ports

sysutils/R-ff 4.5.2 NetBSD

Fast Access Functions for Large Data on Disk

System
NetBSD
Repository
pkgsrc
Maintainer
[email protected]
License
gnu-gpl-v3 OR gnu-gpl-v2
Categories
sysutils, math, R
Package size
949.0 KiB, 1524.4 KiB installed

Description

The ff package provides data structures that are stored on disk but behave (almost) as if they were in RAM by transparently mapping only a section (pagesize) in main memory - the effective virtual memory consumption per ff object.

ff supports R's standard atomic data types 'double', 'logical', 'raw' and 'integer' and non-standard atomic types boolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs), ushort (2 byte unsigned), single (4 byte float with NAs).

For example 'quad' allows efficient storage of genomic data as an 'A','T','G','C' factor. The unsigned types support 'circular' arithmetic.

Install

Binary package:

pkgin install R-ff

From pkgsrc:

cd /usr/pkgsrc/sysutils/R-ff && make install clean

Dependencies

Run dependencies 2

No port depends on this one.