BSD Portswip/bolt-lmm 2.3.2nb1 NetBSD
Statistics for testing association between phenotype and genotypes
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- wip, biology
Description
The BOLT-LMM algorithm computes statistics for testing association between phenotype and genotypes using a linear mixed model (LMM) [1]. By default, BOLT-LMM assumes a Bayesian mixture-of-normals prior for the random effect attributed to SNPs other than the one being tested.
In the other systems
The newest version among them is 2.5, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/bolt-lmm | 2.3.2nb1 behind since 2026-09-04 | none known | - | [email protected] | - |
| FreeBSD | biology/bolt-lmm by name | 2.5_1 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/bolt-lmm by name | 2.3.6_15 behind since 2026-09-04 | none known | - | [email protected] | - |
| GhostBSD | biology/bolt-lmm by name | 2.5 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/bolt-lmm && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 3
No port depends on this one.