wip/centrifuge 1.0.4 NetBSD

Novel microbial classification engine

Homepage
Browse the package
Report a problem
Other distributions
Search similar

System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: gnu-gpl-v3
Categories: wip, biology

Description

[Centrifuge] is a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/centrifuge && make install clean

Dependencies

No port depends on this one.