BSD Ports

wip/cropsr 0.0.0.44 NetBSD

Complex genome-wide CRISPR gRNA design and validation

System
NetBSD
Repository
pkgsrc-wip
Maintainer
[email protected]
License
apache-2.0
Categories
wip, biology

Description

CROPSR: An Automated Platform for Complex Genome-Wide CRISPR gRNA Design and Validation

## About CROPSR

CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

### Citation

Please cite the following when utilizing CROPSR:

Muller Paul, H., Istanto, D.D., Heldenbrand, J. et al. CROPSR: an automated platform for complex genome-wide CRISPR gRNA design and validation. BMC Bioinformatics 23, 74 (2022). https://doi.org/10.1186/s12859-022-04593-2.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/cropsr && make install clean

Dependencies

Run dependencies 1

No port depends on this one.