BSD Portswip/cufflinks-2.2.1 2.2.1 NetBSD
RNA transcript assembly, differential expression/regulation
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- boost-license
- Categories
- wip, biology
Description
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
WWW: http://port.home.page/
In the other systems
The newest version among them is 2.2.1.89, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| NetBSD | wip/cufflinks-2.2.1 | 2.2.1 | none known | - | [email protected] | - |
| FreeBSD | biology/cufflinks by name | 2.2.1.89_15 newest | none known | - | [email protected] | 2026-09-29 |
| DragonFly | biology/cufflinks by name | 2.2.1.89_11 newest | none known | - | [email protected] | - |
| GhostBSD | biology/cufflinks by name | 2.2.1.89_14 newest | no data | - | [email protected] | - |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/cufflinks-2.2.1 && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 5
No port depends on this one.