BSD Portswip/haplohseq 0.1.2.5 NetBSD
Identify regions of allelic imbalance
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- mit
- Categories
- wip, biology
Description
Haplohseq identifies regions of allelic imbalance (AI) in sequencing data obtained from impure samples where AI events exist in a potentially low proportion of cells in the sample. Input to the software includes a VCF file of genotypes and estimated phased genotypes.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/haplohseq | 0.1.2.5 |
| FreeBSD | biology/haplohseq | 0.1.2.3_4 |
| HardenedBSD | biology/haplohseq | 0.1.2.3_4 |
| GhostBSD | biology/haplohseq | 0.1.2.3_3 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/haplohseq && make install cleanDependencies
Run dependencies 1
No port depends on this one.