wip/libGenome 0.5.2 NetBSD
Development library for bioinformatic software
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology
Description
libGenome is a development library written in ANSI C++. It is known to compile on the following platforms:
- Linux using the gcc compiler
- Solaris using the gcc compiler
- Windows using Metrowerks CodeWarrior
- MacOS 9 using Metrowerks CodeWarrior
- OpenBSD using the gcc compiler
- Cygwin using the gcc compiler
libGenome can access sequence data in several different file formats:
- Reads and writes Multi-FastA files, designated by a '.fas' file extension
- Reads and writes GenBank flat file database entries
- Reads DNAStar '.SEQ' file format
- Reads and writes raw sequence data
- Reads ABI file format
libGenome can manipulate sequence data in the following ways: Append, Truncate, Erase subsequences, Insert subsequences, Reverse, Complement, Ambiguity sensitive and insensitive comparison, Translate DNA to RNA, DNA to Protein, RNA to DNA, RNA to Protein, and vice versa.
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/libGenome && make install clean
Dependencies
No port depends on this one.