wip/ncbi-blast+ src NetBSD

NCBI implementation of Basic Local Alignment Search Tool

System: NetBSD
Repository: pkgsrc-wip
Maintainer: [email protected]
License: public-domain
Categories: wip, biology

Description

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

Install

From pkgsrc-wip (no binary package):

cd /usr/pkgsrc/wip/ncbi-blast+ && make install clean

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["wip/ncbi-blast+"]
  u0["wip/repeatmasker"] --> me
  me --> d0["archivers/bzip2"]
  me --> d1["archivers/lzo"]
  me --> d2["archivers/zstd"]
  me --> d3["databases/lmdb"]
  me --> d4["databases/sqlite3"]
  me --> d5["devel/gmp"]
  me --> d6["devel/libidn2"]
  me --> d7["devel/pcre"]
  me -.-> dmore(["7 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

Run dependencies 15

Required by 1

wip/repeatmasker

Description

Install

Dependency graph

Dependencies

Related ports