wip/pooler 1.75 NetBSD
Optimise DNA sequencing primer-set combinations
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- apache-2.0
- Categories
- wip, biology
Description
Optimise combinations of primers and minimise the formation of dimers in multiplexed PCR. Primer Pooler can: * Check through each proposed pool for combinations that are likely to form dimers * Automatically move prospective amplicons between proposed pools to reduce dimer formation * Automatically search the genome sequence to find which amplicons overlap, and place their corresponding primers in separate pools * Optionally keep pool sizes within a specified range * Handle thousands of primers without being slow (useful for high-throughput sequencing applications) * Do all of the above with degenerate primers too.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/pooler | 1.75 |
| FreeBSD | biology/pooler | 1.89 |
| DragonFly | biology/pooler | 1.89 |
| HardenedBSD | biology/pooler | 1.89 |
| GhostBSD | biology/pooler | 1.89 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/pooler && make install clean
Dependencies
No port depends on this one.