biology/pooler 1.89 DragonFly
Optimise DNA sequencing primer-set combinations
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- APACHE20
- Categories
- biology
- Package size
- 90.4 KiB, 195.6 KiB installed
Description
Optimise combinations of primers and minimise the formation of dimers in multiplexed PCR.
Primer Pooler can:
* Check through each proposed pool for combinations that are likely to form dimers
* Automatically move prospective amplicons between proposed pools to reduce dimer formation
* Automatically search the genome sequence to find which amplicons overlap, and place their corresponding primers in separate pools
* Optionally keep pool sizes within a specified range
* Handle thousands of primers without being slow (useful for high-throughput sequencing applications)
* Do all of the above with degenerate primers too.
In the other systems
| System | Port | Version |
|---|---|---|
| DragonFly | biology/pooler | 1.89 |
| FreeBSD | biology/pooler | 1.89 |
| NetBSD | wip/pooler | 1.75 |
| HardenedBSD | biology/pooler | 1.89 |
| GhostBSD | biology/pooler | 1.89 |
Install
Binary package:
pkg install pooler
From DPorts:
cd /usr/dports/biology/pooler && make install clean
Dependencies
Run dependencies 1
No port depends on this one.