BSD Ports

biology/pooler 1.89 DragonFly

Optimise DNA sequencing primer-set combinations

System
DragonFly
Repository
DPorts
Maintainer
[email protected] (as in FreeBSD)
License
APACHE20
Categories
biology
Package size
90.4 KiB, 195.6 KiB installed

Description

Optimise combinations of primers and minimise the formation of dimers in multiplexed PCR.

Primer Pooler can:

* Check through each proposed pool for combinations that are likely to form dimers

* Automatically move prospective amplicons between proposed pools to reduce dimer formation

* Automatically search the genome sequence to find which amplicons overlap, and place their corresponding primers in separate pools

* Optionally keep pool sizes within a specified range

* Handle thousands of primers without being slow (useful for high-throughput sequencing applications)

* Do all of the above with degenerate primers too.

In the other systems

SystemPortVersion
DragonFlybiology/pooler1.89
FreeBSDbiology/pooler1.89
NetBSDwip/pooler1.75
HardenedBSDbiology/pooler1.89
GhostBSDbiology/pooler1.89

Install

Binary package:

pkg install pooler

From DPorts:

cd /usr/dports/biology/pooler && make install clean

Dependencies

Run dependencies 1

No port depends on this one.